Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • News & Views
  • Published:

PLANT GENOMICS

Graph pangenomes find missing heritability

Subjects

The use of association studies to identify candidate genes for complex biological traits in plants has been challenging due to a reliance on single reference genomes, leading to missing heritability. Graphical pangenomes and the identification of causal variants help overcome this and provide an important advance for crop breeding.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Fig. 1: Graph pangenomes capture the genomic diversity that underlies the observed phenotypic diversity and maintains this structural variation information within the context of linear chromosomes.

References

  1. Zhou, Y. et al. Nature https://doi.org/10.1038/s41586-022-04808-9 (2022).

    Article  PubMed  PubMed Central  Google Scholar 

  2. The Arabidopsis Genome. Nature 408, 796–815 (2000).

    Article  Google Scholar 

  3. Appels, R. et al. Science 361, eaar7191 (2018).

    Article  Google Scholar 

  4. Bayer, P. E. et al. Plant Biotechnol. J. 19, 2488–2500 (2021).

    Article  CAS  Google Scholar 

  5. Tettelin, H. et al. Proc. Natl Acad. Sci. USA 102, 13950–13955 (2005).

    Article  CAS  Google Scholar 

  6. Yao, W. et al. Genome Biol. 16, 187 (2015).

    Article  Google Scholar 

  7. Li, Y.-H. et al. Nat. Biotechnol. 32, 1045–1052 (2014).

    Article  CAS  Google Scholar 

  8. Durant, É., Sabot, F., Conte, M. & Rouard, M. Bioinformatics 37, 4556–4558 (2021).

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to David Edwards or Jacqueline Batley.

Ethics declarations

Competing interests

The authors declare no competing interests.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Edwards, D., Batley, J. Graph pangenomes find missing heritability. Nat Genet 54, 919–920 (2022). https://doi.org/10.1038/s41588-022-01099-8

Download citation

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41588-022-01099-8

Search

Quick links

Nature Briefing: Translational Research

Sign up for the Nature Briefing: Translational Research newsletter — top stories in biotechnology, drug discovery and pharma.

Get what matters in translational research, free to your inbox weekly. Sign up for Nature Briefing: Translational Research