Skip to main content

Thank you for visiting nature.com. You are using a browser version with limited support for CSS. To obtain the best experience, we recommend you use a more up to date browser (or turn off compatibility mode in Internet Explorer). In the meantime, to ensure continued support, we are displaying the site without styles and JavaScript.

  • Brief Communication
  • Published:

Predicting the early risk of chronic kidney disease in patients with diabetes using real-world data

Abstract

Diagnostic procedures, therapeutic recommendations, and medical risk stratifications are based on dedicated, strictly controlled clinical trials. However, a plethora of real-world medical data exists, whereupon the increase in data volume comes at the expense of completeness, uniformity, and control. Here, a case-by-case comparison shows that the predictive power of our real world data–based model for diabetes-related chronic kidney disease outperforms published algorithms, which were derived from clinical study data.

This is a preview of subscription content, access via your institution

Access options

Buy this article

Prices may be subject to local taxes which are calculated during checkout

Fig. 1: Results of the predictive algorithms.
Fig. 2: Role of sample size and imputation.

Similar content being viewed by others

Data availability

Restrictions apply to the general availability of the data because of patient agreements and the nature of patient data. Data were used under license for the study presented in this manuscript. The IBM Explorys database data are run by IBM who makes the data available for secondary use (for example, scientific research) on a commercial basis. The INPC database is owned by the participating health institutions of the INPC. Access to the INPC can be provided for research purposes through the Regenstrief Institute Data Core.

References

  1. Trojano, M. et al. Nat. Rev. Neurol. 13, 105–118 (2017).

    Article  Google Scholar 

  2. Marx, V. Nature 498, 255–260 (2013).

    Article  CAS  Google Scholar 

  3. Bender, E. Nature 527, S19 (2015).

    Article  CAS  Google Scholar 

  4. Wu, X. et al. IEEE Trans. Knowl. Data Eng. 26, 97–107 (2014).

    Article  Google Scholar 

  5. Frieden, T. R. N. Engl. J. Med. 377, 465–475 (2017).

    Article  Google Scholar 

  6. Bates, D. W. et al. Health Aff. 33, 1123–1131 (2014).

    Article  Google Scholar 

  7. Razavian, N. et al. Big Data 3, 277–287 (2015).

    Article  Google Scholar 

  8. Miotto, R., Li, L., Kidd, B. A. & Dudley, J. T. Sci. Rep. 6, 26094 (2016).

    Article  CAS  Google Scholar 

  9. Levin, A. et al. Lancet 390, 1888–1917 (2017).

    Article  Google Scholar 

  10. Fioretto, P., Dodson, P. M., Ziegler, D. & Rosenson, R. S. Nat. Rev. Endocrinol. 6, 19–25 (2010).

    Article  Google Scholar 

  11. Wanner, C. et al. N. Engl. J. Med. 375, 323–334 (2016).

    Article  CAS  Google Scholar 

  12. Kaelber, D. C. et al. J. Am. Med. Inform. Assoc. 19, 965–972 (2012).

    Article  Google Scholar 

  13. Hosmer, Jr., D. W., Lemeshow, S. & Sturdivant, R. X. Applied Logistic Regression 3rd edn (John Wiley & Sons, Inc., Hoboken, NJ, USA, 2013).

  14. Vossen, P. Science 357, 22–27 (2017).

    Article  Google Scholar 

  15. McDonald, C. J. et al. Health Aff. 24, 1214–1220 (2005).

    Article  Google Scholar 

  16. Swets, J. A. Science 240, 1285–1293 (1988).

    Article  CAS  Google Scholar 

  17. Bradley, A. P. Patt. Recogn. 30, 1145–1159 (1997).

    Article  Google Scholar 

  18. The Diabetes Control and Complications Trial Research Group N. Engl. J. Med. 329, 977–986 (1993).

    Article  Google Scholar 

  19. Dunkler, D. et al. Clin. J. Am. Soc. Nephrol. 10, 1371–1379 (2015).

    Article  Google Scholar 

  20. Vergouwe, Y. et al. Diabetologia 53, 254–262 (2010).

    Article  CAS  Google Scholar 

  21. Keane, W. F. et al. Clin. J. Am. Soc. Nephrol. 1, 761–767 (2006).

    Article  Google Scholar 

  22. Jardine, M. J. et al. Am. J. Kidn. Dis. 60, 770–778 (2012).

    Article  CAS  Google Scholar 

  23. Liaw, A. & Wiener, M. R News 2, 18–22 (2002).

    Google Scholar 

  24. Unger, J. & Schwartz, Z. Diabetes Management in Primary Care 2nd edn (Lippincott Williams & Wilkens, Philadelphia, 2013).

  25. Glassock, R. J., Warnock, D. G. & Delanaye, P. Nat. Rev. Nephrol. 13, 104–114 (2017).

    Article  CAS  Google Scholar 

  26. GBD 2015 Mortality and Causes of Death Collaborators. Lancet 388, 1459–1544 (2016).

  27. Platinga, L. C., Tuot, D. S. & Powe, N. R. Adv. Chron. Kidn. Dis. 17, 225–236 (2010).

    Article  Google Scholar 

  28. Bursac, Z. et al. Source Code Biol. Med. 3, 17 (2008).

    Article  Google Scholar 

  29. Hastie, T., Tibshirani, R. & Friedman, J. The Elements of Statistical Learning: Data Mining, Inference and Prediction (Springer, New York, 2009).

  30. Van Rijsbergen, C. J. Information Retrieval (Butterworth-Heinemann, Newton, MA, USA, 1979).

  31. Wasserstein, R. L. & Lazar, N. A. The ASA’s statement on p-values: context, process, and purpose. Am. Stat. 70, 129–133 (2016).

    Article  Google Scholar 

  32. Robin, X. et al. pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinformatics 12, 77 (2011).

    Article  Google Scholar 

  33. Carpenter, J. & Bithell, J. Bootstrap confidence intervals: when, which, what? A practical guide for medical statisticians. Stat. Med. 19, 1141–1164 (2000).

    Article  CAS  Google Scholar 

Download references

Acknowledgements

The authors thank O. Quarder, C. Ringemann, P. Stephan (Roche Diabetes Care GmbH, Germany), and H. Mikulski (Roche Diabetes Care Spain, S.L.) for their continuing contributions to this work. We are grateful to T. Beck, S. Chittajallu, and S. Weinert (Roche Diabetes Care, Inc., USA) for their consultancy in the early phase of the investigation. The support from U. Günzel as well as H. Rincker and team (Roche Diabetes Care Deutschland, Germany) is highly appreciated. We are indebted to R. Daikeler, K. Kusterer, S. Waibel, and S. Zink (Germany) for their medical advice concerning our initial results. The research described in this manuscript was funded by Roche Diabetes Care GmbH and supplemented with in-kind contributions from Eli Lilly and Company (S.M.), Indiana Biosciences Research Institute (D.R.), and Regenstrief Institute, Inc. (T.S.).

Author information

Authors and Affiliations

Authors

Contributions

S.R., A.A., A.B., and F.F.F. generated and validated the Roche/IBM algorithm. T.H. and H.K. performed independent validation and further analysis. S.M., D.R., T.S., and teams enabled data withdrawal and assessment. B.S., L.B., and R.H. provided consultation for the overall research project, which was led by W.P.

Corresponding author

Correspondence to Wolfgang Petrich.

Ethics declarations

Competing interests

The authors declare the following potential conflicts of interest: T.H., B.S., W.P., S.R., and A.B. are inventors of a patent application related to the work described in this manuscript. T.H., H.K., B.S., R.H., and W.P. are employees of Roche Diabetes Care GmbH. S.R., A.A., A.B., L.B., and F.F.F. are employees of IBM Switzerland Ltd. S.M. is an employee of Eli Lilly and Company. Independent of his employment at Roche, W.P. is affiliated with Heidelberg University and is a member of the Faculty of Physics and Astronomy. T.S. is affiliated with Indiana University School of Medicine.

Additional information

Publisher’s note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Supplementary information

Supplementary Text and Figures

Supplementary Figures 1–3 and Supplementary Tables 1–7

Reporting Summary

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Ravizza, S., Huschto, T., Adamov, A. et al. Predicting the early risk of chronic kidney disease in patients with diabetes using real-world data. Nat Med 25, 57–59 (2019). https://doi.org/10.1038/s41591-018-0239-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1038/s41591-018-0239-8

This article is cited by

Search

Quick links

Nature Briefing

Sign up for the Nature Briefing newsletter — what matters in science, free to your inbox daily.

Get the most important science stories of the day, free in your inbox. Sign up for Nature Briefing